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format problem(.beagle.gz files)

After I call SNP, I get the file with suffix beagle.gz . The file format that raxml software needs to input is .phy. How can I convert it so that I can successfully use raxml software to build phylogenetic tree.

raxml
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written by Daier • Daier

How are you calling the SNPs?

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written by Arup Ghosh Arup Ghosh

Hello! I use angsd software call SNP

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written by Daier • Daier

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