Dear All,
I am looking for an open souce JavaScript Library that would allow the in browser depiction of pathways I really don't want to pre-generate static images and embed those in a web page, if I can avoid it. Is anybody aware of any resource in this area and could point me? Thanks for your help!
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Nico Adams •
In my bookmarks:
and you could also use something like a remote graphviz dot server to generate your images on the fly:
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Pierre Lindenbaum
Hehe strane situation - I would like to accept both Pierre's and Brad's answers....all of these suggestions are very valuable. Thanks guys....
Strange situation - I would like to accept both Pierre's and Brad's answers....all of these suggestions are very valuable, but unfortunately there can be only one it seems. Thanks guys....
Cytoscape Web uses Javascript and Flash. The Pathguide example in the demos might be a useful place to get started:
http://cytoscapeweb.cytoscape.org/demo
JavaScript InfoVis Toolkit has a few different graph and tree representations you could use to show pathways:
If you wanted to code your own with full control, Processing.js provides a nice framework:
Hi Brad, thanks for that. I had thought of hacking the jit into shape as well - was just wondering whether there were a few more bespoke tools
No problem, wish I knew a more specific tool to suggest. It'll be interesting to hear if others come up.
It is not Javascript, but PathVisio has a html exporter (in beta) that allows visualization of data and clickable backpage information (connected database information for genes and metabolites). See http://www.pathvisio.org/wiki/PluginDocumentation.
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Could you add some details to your question please. Actually I build some interactive KEGG pathways using SVG and Javascript but I don't know if it is what you are looking for.