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Molecular Dynamics Of Glycosylated Protein

I need to perform a MD simulation of a glycosylated protein. I tried using GROMACS 3.2. But it is not able to read the glycosylation. Suggest me some reliable MD platforms to use. Can higher version of GROMACS be used??

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updated by Biostar Biostar • written by srikrish.sree • srikrish.sree

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You need to generate a topology for the carbohydrate molecule. Try the PRODRG server or this one: http://haddock.chem.uu.nl/enmr/services/GLYCANS/

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written by João Rodrigues João Rodrigues

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