Docking After Energy Minimization - Receptor File Too Large
I created a single amino acid change in a protein and energy minimized in gromacs using CG algorithm. After converting the file from .gro to .pdb using editconf option, I uploaded the .pdb file in cluspro for docking. But it says the receptor file is too large. I was able to dock the unmutated protein without energy minimization. How do I overcome this problem?
• 3,421 views
•
link
written
by
srikrish.sree •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Energy minimization beginner
written by Jennifer.Mutisya •
-
About Energy minimization by Gromacs web server
written by mahafujulislamtonmoy •
-
Effect of amino acid mutation (deletion) on the protein structure
written by pixie@bioinfo
-
Molecular Docking Parameters
written by biodano.geo •
-
Error in MDS of complex
written by Arindam Ghosh
-
docking site in pymol
written by elmira b •
-
Ligand minimization Using prodrg
written by pinke •
-
Yasara Help- Saving Energy Minized Model As Pdb File
written by sureshbioinf •
-
Large .Gro File Generated After Energy Minimization In Gromacs
written by priyankapillai13 •
-
Ligand Structure Looks Different - After Docking
written by Sathish •
Check if you can open the file properly in pymol or other viewer and its size is similar to that of the original file. Did you add water and ions before energy minimization which you forgot to remove?