GROMACS RMSD COMMANDS
hi I run protein ligand simulation using gromacs 5.0.4.my final RMSD nm output graph started from 5.2 nm not from 0 nm...i could not able to find the mistake for these result. pls any one tell me gromacs command for final RMSD, DSSP,RMSF and hydrogen bonds.
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adammbbs •
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