SNP index definition
Which is the definition of SNP index? Someone asked me to calculate the SNP index, but I cannot find a definition.
• 1,498 views
•
link
updated
by
ahmad mousavi
•
written
by
deniselavezzari •
•
written
by
deniselavezzari •
1 answer
If you mean how to make index for VCF. Try following :
bgzip -c file.vcf > file.vcf.gz
tabix -p vcf file.vcf.gz
• 0 views
•
link
written
by
ahmad mousavi
Log in to answer this question.
More posts like this
-
Exact steps to calculate the SNP index to identify locality of EMS induced mutation
written by n.anuragsharma •
-
How to Calcualte "Effect Size" and "Effect Allele" of each SNP
written by Raju •
-
Calculation of the genotype likelyhood from raw data
written by Gama313
-
Calculating Effective Population Size from One Individual
written by jsweet6 •
-
BWA MEM paramenter
written by deniselavezzari •
-
Explanation for SNP data and its relativeness to the allele frequency
written by albertoogy •
-
snp index ratio
written by anithabioinfor •
-
What is the definition of LOC# identifier?
written by aleix.arnau1990 •
-
Rate Of Rearrangements
written by mogrob.sanit •
-
Bioinformatic Exam
written by Alex •
You maybe could ask that 'someone' then? Not sure in which context this was asked, but SNP index doesn't ring a bell for me.