This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Memory for Cuffdiff analysis

Hi everyone, just a question, how memory Cuffdiff analysis needs? I've tried with 6GB and 10GB but in both cases I got the message "TERM_MEMLIMIT: job killed after reaching LSF memory usage limit". Thanks

rna-seq
• 857 views • link
written by sarai • sarai

Those are tiny limits on a cluster. Surely you can request 32 or 64G? Can you also check if cuffdiff has a memory usage parameter?

• 0 views • link
written by Ram Ram

I been looking for cuffdiff memory usage but I have not found a satisfactory answer... I'm going to try with 32 and 64G...Thanks!

• 0 views • link
written by sarai • sarai

0 answers

No answers yet.

Log in to answer this question.

More posts like this