SarsCov2 annotation database
Hello!
When sequencing SarsCov2 viruses we get a number of variants, and it would be interesting to see if these variants are already reported and where, or use it as a filtration criteria. Is there an annotation database, ideally as a vcf like dbsnp, that could annotate resulting mutation VCFs for viral whole genome sequencing?
Thanks!
2 answers
Look at the COVID19 data portal variants section.
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Jean-Karim Heriche
You could use Ensembl VEP tool with the right data/annotation.
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They have probably been reported. Question is are they in a place/form that you can query/use. GSAID/NCBI both have thousands of genomes now and since it is only a 29kb genome we should have seen most of changes by now.