Where Can I Find Sample Population Mapping Files For 1000G Data?
I'm trying to analyze the LD between all SNPs within a 36kb block using 1000G data, converting the vcf to a ped file, and using HaploView. But I can't seem to find the sample population mapping files anywhere on the 1000G data website (I need to analyze only caucasians).
Thanks
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mdgallagher71 •
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File of population for each sample: ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/release/20110521/phase1_integrated_calls.20101123.ALL.panel
Post to extract only a subset of individuals: http://www.biostars.org/post/show/15459/downloading-snps-from-1000genomes-for-a-given-individual/#15572.
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Which snp release are you looking at?