LD blocks in Haploview
Hi..i have been using Haploview to study SNP association with disease...while constructing LD block i have observed that very often snps although showing 100 value for D prime are not included in block by haploview..on what bases blocks are constructed by haploview ..need guidance..
Mariam
• 3,691 views
•
link
written
by
mariam_cemb •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
LD block
written by UPO •
-
Post GWAS Interpretation - What Next?
written by petebrotherwood •
-
Is it more correct to use r2 or D' for selecting SNPs in LD?
written by Milos Pjanic •
-
PLINK Haplotype blocks estimation not working
written by nsounac •
-
Significance of genotype frequency in SNP study
written by attiafatima •
-
Haplotype Reconstruction And Gwas For Quantitative Traits In Plants
written by kumar.vinod81
-
Haploview Throws Out "Force To Includ" Snp
written by sci11168 •
-
Visualizing Of Genes In Haploview [Ld Blocks]
written by Alizaid12 •
-
Is Haploview The Best Method For Defining Ld Blocks?
written by User 7433 •
-
Understanding How Snps Affect The Association Score In A Gwas
written by User 6659 •
