SILAC protein data analysis

Hello,

I have SILAC protein data from three patients. How can I normalize the A10: Light/Heavy value over these patients?

Any available software or tools?

Thank you in advance for great help!

Best,

Yue

sequence

• 248 views • link

written 5.7 years ago by yueli7

Hello yueli7!

Questions similar to yours can already be found at:

Which package I can use in SILAC data?

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.

Cheers!

• 0 views • link

written 5.7 years ago by ATpoint

0 answers

No answers yet.

More posts like this

Best tools for scTCR-seq (VDJ) analysis?
written 4.3 years ago by yueli7

Hello, I will analysis scTCR-seq datasets of single-cell immune receptor receptor. Which one is the best tool for VDJ data analysis? VDJ tools, clonotypr, VDJServer, …
database on patients treated with CAR T-cell therapies
written 4.7 years ago by yueli7

Hello, Is there anyone know about any database on patients treated with Chimeric Antigen Receptor (CAR) T-cell therapies? Thank you in advance for great help! …
remove batch effect of SILAC protein data
written 5.6 years ago by yueli7

Hello, I have SILAC protein data which comes from three different days and want to remove batch effect of these data, 1. `knn` function of …
software or R package to change protein *.msf file to any readable file
written 5.7 years ago by yueli7

Hello I have some protein *.msf file. I can not open it. Which software or R package that can change this kind of *.msf to …
Which package I can use in SILAC data?
written 5.7 years ago by yueli7

Hello, I have a set of SILAC protein data which only has the value of the `Light/Heavy`. It has 12 columns and 6674 rows. Which …
SILAC protein data analysis
written 5.8 years ago by yueli7

Hello I am new in analysis SILAC protein data. I have three patients samples which collected from three different points of time, and no replicates. …
principal component analysis (PCA) of single cell samples which come from different libraries
written 6.2 years ago by yueli7

Hello, I have 17 single cell samples which come from different libraries. They are 8 healthy, 3 mild and 6 severe patients samples. First, I …
demo data of minnow
written 6.5 years ago by yueli7

Hello, I tried to use `Alevin` software. I followed https://combine-lab.github.io/alevin-tutorial/2019/running-minnow/. But where is the data of `transcript.fasta,t2g.tsv,quants_mat.csv,quants_mat_rows.txt,quants_mat_cols.txt` ? Thanks in advance for great help! Best, …
Seurat nFeature_RNA filter number in human
written 6.7 years ago by yueli7

Hello, Anyone, This command in Seurat package means that : We filter cells that have over 2,500 or less than 200, >5% mitochondrial counts. If …
protein pathway analysis software or tools
written 6.8 years ago by yueli7

Hello, Anyone know any software that can analysis protein pathway? Just like: GProX, a User-Friendly Platform for Bioinformatics Analysis and Visualization of Quantitative Proteomics Data …