I am trying to analyze human WGBS data using Bismark and methylkit package. I found some discrepancy in %methylation and trying to understand the results. …
Is there any **FREE interactive online tool** for `Gene Ontology enrichment analysis of biological processes` for summarizing `up- and down-regulated` **Arabidopsis thaliana genes**? For example, …
Anybody could recommend a package for creating this plot using the output of cnvkit? I want to create a plot like this<br> <a href="https://ibb.co/5r5KvZS"><img src="https://i.ibb.co/X7zYpHK/image-chromsome.jpg" …
I performed a differential gene expression analysis for the red vs. blue group as shown in this image below (RNA-seq data) using TCGAbiolinks which uses …
Hi all, I’m trying to plot the methylation distribution along a set of genes using a metagene approach including the two flanking upstream/downstream regions. In …
Hi am using cummeRbund for fRNASeq expression plot analysis and using their [manual][1] I came out with this [model fit plot][2]. could someone explain what …
those points are related to the log transformation when you have 0 or close to 0 values