Dear all, I processed raw methylation data using minfi and methylation array analysis libraries and finally came to a point that after I fit my …

Hi there, I'm using WGCNA to construct co-expression network. My input is z-score normalized expression from RNAseq. Here is the distribution of normalized expression cross …

Hi there, This is my first time doing a PCA/Covariance analysis of a 20ns Protein-Ligand simulation using gmx covar and gmx anaeig commands from Gromacs. …

For example, RNA-seq expression for gene1 in 10 people are, GENE1=[0, 0, 1, 2, 3, 4, 3, 4, 2, 7]。 SNP1 with alleles A and …

Hi all, I am working with GSEA results using GSEA pre ranked. My input is list of genes with their log2foldchange as the metric . …

Hello, I have an RNA-Seq experiment( OCT4 KO vs WT mouse) and ChIP-Seq experiment ( WT vs OCT4 enriched ChIP sample). I have analysed my …

Hi supposing I have performed an RNA Seq experiment is there a way to check that the final results (Cuffdiff output ) is correct ? …

Hi Everyone, I am having trouble creating a Gene Set using cummeRbund (R software used to analyze cufflinks, cuffdiff output). I have been working from …

I am conducting differential expression analysis in limma for a time course microarray experiment. I have 3 time points (1,2,3) and two conditions (control,disease). My …

Hello, I am having an issue with gene tracking in cummeRbund. Here is the cuff output: ```r > cuff CuffSet instance with: 4 samples 23285 …