This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Pipeline For Amplicons Analysis

Hi all! Could you recommend any pipelines for analysis of amplicons ? Is supposed that we will analyze the data from MiSeq (PE reads 2 x 150bp, file format fasta or fastq). I'll be thankful for any information.

miseq pipeline analysis

1 answer

Take a look at GATK from the Broad and Picard library for quality control.

Log in to answer this question.