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Starsolo is not extracting barcodes

On10X data (ScRNA) and am trying to run Starsolo, however it is not extracting barcodes from sequencing file. What may be the reason. I have used all the parameters as suggested @ https://galaxyproject.github.io/training-material/topics/transcriptomics/tutorials/scrna-preprocessing-tenx/tutorial.html The output simply has no barcode. When I randomly look at 5' seq some of them align with white list.

rna-seq

Hello rob.costa1234!

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rob.costa1234 : Can you clarify if you are using galaxy to do the analysis or are just using the guide you linked to get the parameters?

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