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Ciri run error

Hi I downloaded ciri to find circular RNAs in RNA-seq data. I execute below command: 

perl CIRI2.pl -I test.sam -O outfile -F dm6.fa -A drosophilaNCBI.gtf

but I see below error:

Can't open perl script "CIRI2.pl": No such file or directory

I appreciate if anybody share his/her comment with me.

Thanks in advance.

rna-seq circular rna
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written by aminijavad4 • aminijavad4

1 answer

Use the full path to CIRI2.pl like so:

perl /path/to/CIRI2.pl ...
• 0 views • link
written by Ram Ram

Thanks. but I still get an error 

 Can't open perl script "/path/to/CIRI2.plperl": No such file or directory
• 0 views • link
written by aminijavad4 • aminijavad4

I hope you did not literally use /path/to/CIRI2.pl. Where is CIRI2.pl located in your file system?

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written by Ram Ram

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