Dear all,
I used GenePy v1.2 a score for the analysis of next generation sequencing data. I performed all steps mentioned in *README an my analysis is constantly failing at the last step.
The first required input to GenePy is a multi-sample VCF. The recommend filters were aplied to improve score consistency based. Annovar-ready file was made and annotation was performed.
ALL_genepy.meta file is created, and GenePy_1.2.sh can be run by simply iterating through the list of deisred genes. After running this step on the command line I am getting ERROR:MHRT (ERROR:Gene name) and same for all genes in the analysis.
Does anyone know what can be the reason and how can I fix it?
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