Hi there I'm doing skato analysis with rvtest/2.1.0. My script: rvtest --inVcf file.vcf.gz --pheno phenofile --out newfile --geneFile refFlat_hg19.txt --kernel skato it runs for a …
Hi! Can someone explain what is the difference between *.egenes.txt.gz and *.signif_variant_gene_pairs.txt.gz files? They are from GTEx v8 single-tissue eQTL data. Also I would want …
When running CMC test, the output has NumVar, NumPolyVar, and NonRefSite. What do they mean? - GitHub repo: https://github.com/zhanxw/rvtests - Manual page: http://zhanxw.github.io/rvtests/
See related post and GitHub issue: