EPACTS and PLINK
Hello EPACTS (q.lm / q.emmax) and PLINK (-linear) are linear regression. Why is snp's P-value different? Have you ever experienced mendelian randomization through EPACTS? I switched EPACTS from PLINK to VCF files, but would it be a problem? Since all of the files in the VCF file are ".", we changed it to "PASS" at random.
Thank you.
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