Calculating power using ssizeRNA
Hello,
I am planing to using ssizeRNA to calculate power for particular number of subjects. I can see from docs: https://cran.r-project.org/web/packages/ssizeRNA/ssizeRNA.pdf
I do have my expression matrix (rows genes, columns subjects) and I also have limma's topTable() top ranked genes document. Is there is a way to generate from this average gene counts an how to do that? I am guessing that dispersion (also required by ssizeRNA) I can calculated using: https://www.rdocumentation.org/packages/edgeR/versions/3.14.0/topics/estimateDisp
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Sample size estimation with ssizeRNA in R
written by Nana •
-
Gene Set Comparison Without Expression Data
written by Eliza •
-
Bulk RNA-seq time course data with unknown sample sizes?
written by Dunois •
-
metaSeq: Meta-analysis of RNA-seq count data
written by Anand •
-
EdgeR - Input for Analysis Functions (estimateDisp, exactTest, glmQLFit)
written by Noah E. •
-
post-hoc (Tukey) on adonis (permanova)
written by mario_de_manner •
-
Documentation on the contents of the "pubtatordb" package in R?
written by n,n
-
WGCNA Eigengene and intramodularConnectivity
written by AJ •
-
Tool: Computational Suite For Bioinformaticians and Biologists -- CSBB [Version 2.1]
written by Praneet Chaturvedi
-
Using A Variable As A Blocking Factor Vs Putting It As A Term In The Model Formula?
written by Ryan Thompson
