Obtaining FASTA format from blastp output
Is it possible to convert BLAST hits from the blastp command in order to have the output into a FASTA file containing the sequences of the hits from the blast search? I do not want any statistics or alignments, just the hits in FASTA format. Alternatively, if this is not possible, is there a way to take a list of protein accession numbers and retrieve their sequences in FASTA format?
Thanks!
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see Extracting Fasta Alignments From Parsed Blastxml File