find NBCI transcript with longest coding sequence for a list of human genes
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Take a look at MANE project that is a collaboration between NCBI/EBI.
Is it possible to identify unambiguously all the genes using these gene symbols in ncbi search? Perhaps, additional filters like " AND Homo sapiens[Primary Organism] AND refseq[filter]" may be necessary. If it is possible, you may easily download all the sequences for different transcripts and then identify longest ones with rentrez package in R, using entrez_search to get id's and then entrez_fetch with rettype argument set to "fasta".