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About RefSeq Accession Number trasformation

May anyone gives me some suggestions? I would like to modify a file in transforming the gene_id into protein_id based on this conversion table.

Thank you very much

https://www.dropbox.com/s/9av18k96ic4224b/Gene%20id_Protein%20id.png?dl=0

gene id
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written by r00628112 • r00628112

Can you please elaborate more. What is your input? What do you expect as output? Approximately how many gene IDs are you trying to convert?

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written by vkkodali_ncbi vkkodali_ncbi

About 2000 gene id. Because I annotated GO term by using protein fasta file, but the gene_id and protein_id are different. Thus, I can not continue the further analysis.

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written by r00628112 • r00628112

So, if I understand correctly, you have two files -- one is a two-column table with gene_id and protein_id and the other is a table with protein_id and go_term columns. You can use the unix command join to join the two files on the protein_id column. I suggest you take a look at some of the examples here.

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written by vkkodali_ncbi vkkodali_ncbi

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