Plink tped and tfam files to vcf conversion

Hi,

I have plink format .tped and .tfam files, in the format of A,B alleles. Could someone please advise how to convert these back to vcf format in 0/1 format. I tried the plink commands with --recode vcf, but didn't work as expected. Any advise is high appreciated. Thanks in advance!

zcall vcf tped plink tfam

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written 6.1 years ago by ShubTheFlash •

but didn't work as expected

so what happened ?

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written 6.1 years ago by Pierre Lindenbaum

Thanks for your reply. I ran a command along the lines:

plink --tped file.tped --tfam file.tfam --recode vcf --out out_vcf_file

I got the following error: Processing .tped file... 100% Error: File write failure. Error: Failed to finish writing to log.

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written 6.1 years ago by ShubTheFlash •

0 answers

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