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MACS peak calling error

Hello, I am on step peak calling using macs2. However, I am getting this error: from MACS2.Constants import * ModuleNotFoundError: No module named 'MACS2'

However, macs is already installed. Please suggest what should I do.

chip-seq software error sequencing rna-seq
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updated by teurydc • teurydc • written by sidrah.maryam • sidrah.maryam

Maybe the path in which the program is looking for modules is not the same path in which your module is actually installed?

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written by Diedes • Diedes

I’m unsure about Mac, but I recently did some peakcalling using ChipSeeker and ChipPeakAnno, which are packages in R. I used a bed file.

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written by student12 • student12

This does not answer OP's question. Please do not add answers unless they actually do answer the question.

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written by Ram Ram

2 answers

This error might be related to the path where it is installed. Have a look at the thread: https://github.com/macs3-project/MACS/issues/132

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written by Shalu Jhanwar Shalu Jhanwar

Thank you !! It solved the problem. The command was using macs2 installed at a different path.

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written by sidrah.maryam • sidrah.maryam

If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one answer if they all work.

Upvote|Bookmark|Accept

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written by Ram Ram

jaja probando mensaje en espa;ol

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written by teurydc • teurydc

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