Does anyone know any ANNOVAR alternatives for Whole Genome Sequencing with flexible filters for annotations of a VCF file?
Hello everyone,
I'm looking to find alternatives to ANNOVAR whole genome sequencing annotations that offers flexible filtering options for non-coding regions of DNA? If anyone has any experience of open source tools used for this please let me know. Thank you.
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berick •
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screadore •
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What's wrong with ANNOVAR that you want different?
I add myself here. What's wrong with Annovar is that no direct download is possible. Which is enough to look for alternative: neither Conda or Docker containers, no way to include it in a Docker container if you want to redistribute it.