Fastq-dump timeout exhausted error
Hi i m getting the following error while converting the sra to fastq using fastq dump:
fastq-dump.2.8.0 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed )
I have tried many times but not able to find a solution to this. Please help me regarding this.
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smrutimayipanda •
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See sra-explorer : find SRA and FastQ download URLs in a couple of clicks and Fast download of FASTQ files from the European Nucleotide Archive (ENA) These links explain how to directly download fastq files rather than using
fastq-dumpwhich is sometimes quite unreliable. Version 2.8.0 is very old, consider updating it.Thank you for your reply. I will definitely go through this.