Is it possible to use DAVID enrichment with single ranked list of genes?
Hey, I know that it is possible to use DAVID enrichment with a background and target lists. Is it possible to use it on a single ranked list, and see which functions are enriched at top of the list? thank you!
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tgutman100 •
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Did you check the DAVID documentation and FAQ? - I do not recall seeing anywhere that it supports a ranked list of genes.
For a ranked list of genes, I would instead use topGO, clusterProfiler, KEGGprofile, and / or fGSEA. Note that clusterProfiler actually has a DAVID function.
Kevin
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I didn't see it either, but I wasn't sure if it doesn't have that function or if I was missing it. Thank you!