Long non Coding RNA databases for GSEA and ORA
Hi! I am doing GSEA and ORA on RNA-seq data with mRNA and non-coding RNAs mixed. I need to look especially into the lncRNAs but it is being difficult to obtain results. Does someone know a database I could use for lncRNA? I am new at this and I am not entirely sure what should I use. Thanks!
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Blastx issue
written by Avik •
-
lncRNA and ncPEPs identification
written by atharvakarkare14 •
-
Which RNA type I should considered as long non-coding RNAs
written by zizigolu
-
How to change MirBAse ID with org.Hs.eg.db library
written by Van9 •
-
long-non coding RNA and protein-coding genes correlation
written by seta
-
RNA-seq analysis and Protein Kinase Activity
written by Van9 •
-
GTF file in Ensembl database for RNA-Seq analysis
written by wangdp123
-
How to perform lncRNA differential gene expression analysis (unstranded)?
written by mmitra •
-
How to profile non-coding sequencing based on NONCODE and RNAseq data
written by niu2rseq
-
Which Aligment Tool Do You Use To Find Rna Orthologs
written by Tonig
Which part is difficult? Is there an error you are getting?
It is difficult to get results because the databases I am using for the analyses do not contain information about lncRNAs I guess... I don't get any error, it is just that it does not find any result. (It works well because I do the same with mRNA and I get the corresponding results).
So what you really are looking for are lncRNA pathways (or gene sets), right?