bcftools isec question?
How does bcftools isec work, ie. which parameters does it intersect on? I was assuming chromosome, position, ref, and alt alleles only, and disregards any information in the INFO, FILTER, etc. columns. Or does it intersect on any other fields in the VCF?
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Pierre Lindenbaum
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vctrm67 •
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vctrm67 •
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http://samtools.github.io/bcftools/bcftools.html#common_options
-c, --collapse snps|indels|both|all|some|none|id
Controls how to treat records with duplicate positions and defines compatible records across multiple input
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