Hi, I have been running protien BLAST search on my protein which is present in many bacterial and eukaryotic species, as well as archaea. I …

I try to BLAST a list of queries (queries.fasta) against a local mirrors of NCBI nucleotides database (`nt`) and taxonomic database (`taxdb`). I run the …

Hello, I am a student trying to create a project program which requires executing BLAST search functions. I am currently using the module from Biopython …

Hello, I am trying to figure out how to do blast for the denovoassembay results, I don't have access to supercomputer and looking for a …

I did local blastx with -outfmt 14, generating xml files (which is recommended by blast2go). When I import the xml files into OmicsBox and run …

Dear Biostars community, I am trying to determine the abundance and taxonomic distribution of a gene cluster in human gut microbiome samples (metagenomic sequencing). I …

I have been trying to figure out a solution to feed Tax4Fun with the results generated by blast + MEGAN. My goal is to blast …

Hi, I am trying to BLAST many reads against the MaarjAM database (http://maarjam.botany.ut.ee/?action=sTax), a database strictly for arbuscular mycorrhizal fungi sequences. I was able to …

Hello, I'm just learning how to use blast from the command line. I used blastn to search contigs in our genome assembly against a local …

Hi, I am trying to figure out whether my gene of interest is expressed differentially between two tissues. I have been looking at GEO, but …