Filter a VCF file using Galaxy
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3.9 years ago

Hello,

I want to filter a VCF file according to the QUAL field. Is there any way to do that in Galaxy (I need to do it in galaxy for a project).

Alternatively, I used FreeBayes for variant calling. Is there a way to specify to FreeBayes (again in galaxy) that I only want variants with a QUAL higher than a certain threshold?

Thanks!

galaxy vcf freebayes • 1.3k views
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