SnpEff with files from 1001 genomes (sequences from Arabidopsis thaliana).
Hello! Did someone download the files from 1001 genomes (in vcf format) and worked well in SnpEff? When I try to use these files in SnpEff it appears the following: (error: cannot read the input file). Thanks!
• 1,239 views
•
link
written
by
brunotgaraupaula •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Error getting the genome on clinvaR
written by camillab. •
-
Require suggestion for python tools that can implement VCF file into FASTA files
written by Rachayita •
-
Input file for sRNA bench
written by abhay.kanodia •
-
Exec format error: bcftools failing to open an indexed VCF file
written by Ella •
-
Generating a dotplot following ragtag scaffolding
written by kschach2 •
-
Calculating pi and phi from VCF files on R
written by maho4822 •
-
vcftools Error: Require Genotypes in VCF file in order to output as 0/1/2 matrix.
written by mayara.salvian •
-
Column names SNP data PopGenome
written by Mr Locuace
-
Genespring 13.0 ERROR : .com.strandgenomics.cube.framework.ani....
written by anm17 •
-
Vcf-Compare Vcftools Error
written by Leandro Batista •
Please share the command you are using.
I run the following command: " java -Xmx4g -jar snpEff.jar Arabidopsis_thaliana 108_snpeff>ejemplo.ann.vcf", and then appears the following message: "Error : Cannot read input file '108_snpeff'" .
Thanks and best regards.