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Dna Pairwise Alignment Using Matlab

Hey everybody I'm trying to implement a Matlab code (though there is a built in function) to do simple alignment for two DNA sequences. if anyone have an Idea help needed.

Thanks a lot in advance

matlab dna pairwise alignment
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updated by Gmoney Gmoney • written by HMZ Gheidan • HMZ Gheidan

Help in what manner?

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written by Arun Arun

as simple as I announced it is just 2 DNA sequences alignment, Im trying to start a student version for such a thing !

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written by HMZ Gheidan • HMZ Gheidan

also, gapped or ungapped

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written by Ying W Ying W

gapped ... as I saw it does not make a big change in the algorithm cause we will use the scoring tables !

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written by HMZ Gheidan • HMZ Gheidan

1 answer

Have you considered looking at Smith-Waterman examples?

http://en.wikipedia.org/wiki/Smith%E2%80%93Waterman_algorithm

Here's an example in python: http://narnia.cs.ttu.edu/drupal/node/104

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written by Gmoney Gmoney

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