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RNA-Seq data from GEO http vs SRA

Hi all

I want to get the raw RNA-seq fastq files from GEO. I want to know whether the data I get from the (http) from the supplementary files is different from the data we get from SRA in the relations. Also, is there a way to get all the SRX files at once with wget?

rna-seq geo
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updated by lieven.sterck lieven.sterck • written by jabbari.parnian • jabbari.parnian

Also, is there a way to get all the SRX files at once with wget

Not in the sense you are thinking i.e. one wget line. But it is possible with the tool @lieven mentioned to generate all of the necessary command lines at once.

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written by GenoMax GenoMax

1 answer

I found this 'tool' very useful when querying and downloading data from SRA /ENA / ....

https://sra-explorer.info/

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written by lieven.sterck lieven.sterck

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