allele frequencies for GWAS from 1000genomes or HRC
I have GWAS summary results of a European population. the authors do not want to share the allele frequencies, they have suggested I get them from a reference panel e.g. 1000 genomes or HRC.
Looking at the website for 100genomes and HRC I'm not sure how I do this (I am new to this area having a clinical background).
Is there a panel I can download and merge with my SNPs to find the eaf?
All advice greatly appreciated.
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to perform quality control for sex when there are no variants after thresholding for MAF
written by kl •
-
How do I merge imputed GWAS data
written by reagan •
-
CNV detection from populational allele frequency data
written by Eugene A
-
convert 9million Marker Names to rsid
written by mk19726 •
-
"hrc-1000g-check-bim.py" Unable to open specified bim file
written by zhangcc89 •
-
Whether to include reference genome in PCA for association analysis?
written by Phoenix Mu •
-
Add AF from 1000 genomes vcf file to a different vcf file
written by GK1610
-
PopGenome fasta input
written by tiffany.kosch •
-
Compare allele frequencies between populations
written by sjohn •
-
How To Calculate A Population Specific Allele Freq In 1000 Genomes Release 20101123 Using Vcftools?
written by Noel •
