How to check the conservancy of DNA sequence.
I have a small DNA segment and my dataset has almost 100 long DNA sequences. I want to check whether this DNA segment is conserved among all DNA sequences in my dataset. The conservancy result should be in a percentage (like it is 90% or 100% conserved). IEDB Epitope Conservancy Analysis tool does the exact same thing that I want, but it is for protein sequences.
Is there any such tool for DNA sequences?
• 1,178 views
•
link
written
by
Anisur Rahman •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Alignment tool for very short reads (25bp)
written by Anisur Rahman •
-
Should I Learn Docker to Run Command Line Bioinformatics Tool?
written by Anisur Rahman •
-
search for intron conservancy across species
written by Buffo
-
How to identify 2 genes that have highly identical sequence
written by Ak •
-
How to detect which plasmids occur multiple times in a collection of fragmented whole genome assemb…
written by bas1993 •
-
Sort and extract common entries from a txt file.
written by Anisur Rahman •
-
Downloading conserved untranscribed sequences of multiple species
written by max.rempel2 •
-
Aligning gene sequences
written by Anand Rao
-
B Cell Epitope Prediction: Maximizing Antigenicty and Minimizing Sequence Length
written by jondriscoll1988 •
-
aligning sequences for primer design later
written by nouranatef.khalil •
All DNA residues - A, G, C and T - are legitimate protein residues as well. If percent identity is all you care about, enter your nucleotide sequences into that form and pretend they are proteins. It should work.