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TermGo enrichment for virus sequences.

Hel lo, I have a set of Genkank accession number of virus sequences .

This subset of data was recovered from all viral refseq sequences present in NCBI.

And I would now like to test the term go enrichment of my data subset from the refseq gene universe.

So I was thinking of using a packagR like the one in TopGo but, I can't find the library for viruses? Anyone have an idea for a package that contains them so I can do my analysis?

Thank you very much and have a nice day

termgo gene ontology r
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updated by Antonio R. Franco Antonio R. Franco • written by Chvatil Chvatil

1 answer

Have you found enough GO terms for your viruses genomes to run such an enrichment ? This would be something that worries me

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written by Antonio R. Franco Antonio R. Franco

In fact I use the virus refseq data in NCBI, (this is a database of virus genes harvested from the genomes of several viruses).

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written by Chvatil Chvatil

I am concerned about the low number of genes included in a virus' genome. I don't see clearly whether a GO enrichment can be done with only a tens of genes. Maybe I am wrong

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written by Antonio R. Franco Antonio R. Franco

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