Tool for translating chromosomal location to gene name (for human)
Hello,
Can anyone recommend a good tool for translating a list of chromosomal locations to gene names
For example:
chr1 2000 -> <gene_name1>
chr2 2008880 -> <gene_name2>
Thanks! Roni
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Carambakaracho
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haasroni •
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haasroni •
2 answers
Based on the assumption your reference would be the human genome, the Ensembl variant effect predictor would be an option
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Carambakaracho
For a small data set, try Ensembl's biomart otherwise, you can also do it using the Ensembl perl API.
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Jean-Karim Heriche
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