Visualization of chromosomal locations

I need a tool to visualize multiple (approx 6000) chromosomal locations on an ideogram. They are in the form of bed file

Eg:

chr1 startpos endpos

Is there a tool to do this?

genome

• 2,497 views • link

updated 7.9 years ago by Ram

• written 10.5 years ago by sagardesai91

2 answers

You can use a genome browser for that. Most will accept a BED file. IGV (Java app) and UCSC Genome Browser (web-based) are probably most popular, but it really depends on your field. There is a very comprehensive list available here.

• 1 views • link

updated 7.9 years ago by Ram

• written 10.5 years ago by igor

Integrative Genomics Viewer can load BED files and overlay the intervals on the genome of your choice.

• 1 views • link

updated 7.9 years ago by Ram

• written 10.5 years ago by Dan D

Thanks alot Dan!

• 2 views • link

written 10.5 years ago by sagardesai91

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