TCR/BCR repertoire Analysis
Would studying TCR/BCR repertoire in the case of COVID-19 be any helpful? If yes, are there any data/articles available so that I can study and practice?
tcr
bcr
immunology
covid-19
• 770 views
•
link
written
by
phoenix.sum13 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How do I combine or integrate my VDJ data for TCR and BCR with seurat object?
written by Jaber •Greetings I am analyzing V(D)J single-cell data from the 10x Genomics dataset: https://www.10xgenomics.com/datasets/nsclc-tumor-1-standard-5-0-0 This dataset comes from a single sample (non-small cell lung cancer tumor, …
-
Gini coefficient TCR repertoire
written by Lucy •Hi, I would like to calculate the Gini coefficient for my TCR repertoire data. I have seen that this can be calculated using the DescTools …
-
Tool: Fast and painless exploration of single-cell/bulk T-cell and antibody repertoires in R
written by vadim.nazarov**Immunarch (https://immunarch.com), an R package for fast and painless single-cell/bulk exploration of T-cell and antibody repertoires, is finally on CRAN.** Immunarch is created to improve …
-
Question about COVID19 data sets
written by rob.costa1234I am looking to download or analyze a compilation of following two data sets : 1. Sequencing of virus isolates from COVID 19 patients.( if …
-
NGS data repositories for COVID?
written by rh5118 •Hi Biostars! Anyone know if there are publicly available immune repertoire/BCR sequencing or phage display datasets for COVID? Not sure if this is the appropriate …
-
covid-19 publicly available data
written by cocchi.e89I don't even know if this is the best place to ask it but, as a bioinformatician community think somebody here may know something. I …
-
Independent projects in Bioinformatics
written by phoenix.sum13 •Hi, I'm looking for a project in Bioinformatics that I can do on my own using data available online. I've been looking for an internship …
-
Public COVID-19 bam files
written by juniper-Are there any publicly available raw sequencing data for COVID-19? In BAM for FASTQ format?
-
Forum: Immune Repertoire Analysis Survey
written by vadim.nazarovHi, I’m a chief developer of popular [tcR package][1] for TCR/BCR repertoire analysis in R (more than 11000 downloads). It’s been a while since I’ve …
-
Tutorial: RepSeq data processing and analysis
written by mikhail.shugayTo the best of my knowledge, there are currently no tutorials available for **immune repertoire sequencing** ([RepSeq][1]) data analysis. On the other hand, the number …
Hello phoenix.sum13!
We believe that this post does not fit the main topic of this site.
This is no bioinformatics-related. Please browse current literature and preprints.
For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.
If you disagree please tell us why in a reply below, we'll be happy to talk about it.
Cheers!