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Defining Region Of Interest Inside A Track In Igv

Hi, I need to create a custom IGV track and force the software to visualize directly my region of interest when I load the track (instead of having the user manually choosing the region of interest). Is there a way of doing that in IGV? It UCSC you only have to add "browser position chr22:20100000-20100900" to the track. What about IGV?

Thanks a lot in advance

igv
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updated by Sukhi Singh Sukhi Singh • written by Rossella • Rossella

1 answer

So, you probably have to make xml file, this what Jim Robinson (developer of IGV) told me. This xml is a session file which talks to IGV and how to make one for with custom track position, its given here

Cheers

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written by Sukhi Singh Sukhi Singh

Perfect, that is exactly what I needed! Thanks a lot

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written by Rossella • Rossella

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