extract .gff files from prokka outputs
I need a comment line to extract .gff files from several prokka result folders. infiniment goods
• 2,674 views
•
link
written
by
AbdelAbdel •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
GFF3 files
written by Percy •
-
Creating a multiple sequence alignment based on multiple genes.
written by matejasoretic •
-
Creating a multiple sequence alignment based on multiple genes.
written by matejasoretic •
-
How to parse protein and dna sequences from prokka generated gbk or gff file based on locus_tag?
written by Kumar
-
renames files with the same folder name
written by AbdelAbdel •
-
how I can extract files (.fna) that is in multiple folders with a for loop.
written by AbdelAbdel •
-
problem in launching prokka
written by AbdelAbdel •
-
prokka for several files at once
written by AbdelAbdel •
-
Genome Annotation Output Files Naming
written by Fid_o •
-
Draw annotations on the predicted CDS/genes using a software/tool
written by DanielC
To clarify: you want to get only the gffs from a bunch of prokka output folders?
yes yes exactly the same question
Assuming all your prokka directories are subfolders of the same root (e.g.
root/prokka1, root/prokka2, ...) and you want to copy the gffs into a folder/path/to/gff:It's walking, thank you very much.