Entering edit mode
4.1 years ago
Nicolas Rosewick
11k
Hi,
I'm trying to access Genome Nexus API to annotate some variants.
I'm using the example on their github :
https://github.com/genome-nexus/genome-nexus/blob/master/notebooks/genome_nexus_r_example.ipynb
For instance I want to check variant 7:g.55249071C>T (hg19)
On Genome Nexus website everything's ok : https://www.genomenexus.org/variant/7:g.55249071C%3ET
In R :
library(rapiclient)
client <- get_api(url = "https://www.genomenexus.org/v2/api-docs")
operations <- get_operations(client)
res <- operations$fetchVariantAnnotationGET(variant="7:g.55249071C>T")
res
Response [http://www.genomenexus.org/annotation/7:g.55249071C>T]
Date: 2020-03-06 13:24
Status: 400
Content-Type: text/html;charset=utf-8
Size: 800 B
content(res)
{html_document}
<html lang="en">
[1] <head>\n<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">\nHTTP Status 400 – Bad Request \n<style type="text/css">h1 {font-family:Tahoma,Arial,sans ...
[2] <body>HTTP Status 400 – Bad Request
</body>
Did I miss something here ?
Thanks
