fixing error in trinity
Can some one help me fixing the error mentioned below:
Error, cannot cd to /home/azatodron/Downloads/data analysis/trinity_out_dir at /usr/lib/trinityrnaseq/Trinity line 1232
rna-seq
trinity
• 1,037 views
•
link
updated
by
Ram
•
written
by
nitishd.dave •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Trinity error: conversion thread failed
written by fuad.fsu •Hie, Can anyone please help me to solve the following error please error: conversion thread failed at /home/fuad/Downloads/Trinityrnaseq-v2.6.6.wExtSampleData/Trinityrnaseq-v2.6.6/util/insilico_read_normalization.pl line 333. Error, cmd: /home/fuad/Downloads/Trinityrnaseq-v2.6.6.wExtSampleData/Trinityrnaseq-v2.6.6/util/insilico_read_normalization.pl --seqType fa …
-
seqtk-trinity error
written by fuad.fsu •Hello, I am using Trinityrnaseq-v2.6.6 in Ubuntu 20.04. while using it I am facing an error text: Error, cannot locate Trinity-specific tool: seqtk-trinity in the …
-
Error normalization process Trinity
written by weimabri •Hello I hope everyone is well. I have a question with this error in the normalization of the data. I use this command ./Trinity --seqType …
-
problem with Trinity command run in denovo transcriptome assembly
written by Aliviya •I tried to run my Trinity command for the assembly but this is the error I've been getting .. please help let me know where …
-
Problem in Trinity Assembly. How can I fix it?
written by trinimaclean •**Hi! I am trying to assembly transcripts by using Trinity Assembly. I am running the following command:** Trinity --seqType fq --left 121A.200.left.fastq --right 121A.200.right.fastq --CPU …
-
Running rnaseq-trinity about command line
written by pr.khavari •Hi everyone, I have a problem in running rnaseq_trinity, my command line is here: /home/marziyeh/Software/trinityrnaseq-Trinity-v2.4.0/Trinity --seqType fq --max_memory 4G --left /home/marziyeh/Data/RNA-seq\ data/Main\ data/paired_32_L3_1_trimmed.fq.gz paired_33_L3_1_trimmed.fq.gz --right …
-
DE analysis using trinity
written by sukesh1411 •Hi I am new to RNA-Seq data analysis. I am using example files, which is given in trinity to perform denovo assembly of rna-seq data. …
-
problem with trinity
written by mra8187 •dear all when i am using Trinity v 2.3.2 by this command .`/Trinity --seqType fq --max_memory 5G --single '/media/mra/4A3B44B64CA65A93/SNP/DATA/Queen-Larvae/SRR1571722/Trimmomatic/SE/SRR1571722-1.trimmed.fastq' --CPU 4` i see error ... …
-
Error at Inchworm during running Trinity
written by snar86 •Hello, I ran Trinity with this command Trinity --seqType fq --max_memory 20G --left 2025-bark-1b_R1.fastq --right 2025-bark-1b_R2.fastq --SS_lib_type RF --CPU 8 but i got this error: …
-
run Trinity on a server
written by luigi.marongiu •Hello, I ran Trinity with this command sudo Trinity --seqType fq --max_memory 10G --no_bowtie --no_version_check --left pairedA_c20lr1,pairedB_c20lr1 --right unpairedA_c20lr1,unpairedB_c20lr1 --CPU 10 but I got the …
Check if the directory exists (so if you can
cdinto it). Maybe remove the whitespaces.Just a guess, but you have a folder with a space in its name:
data analysis.Thanks but now encountered new error