This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Trinity error: conversion thread failed

Hie, Can anyone please help me to solve the following error please

error: conversion thread failed at /home/fuad/Downloads/Trinityrnaseq-v2.6.6.wExtSampleData/Trinityrnaseq-v2.6.6/util/insilico_read_normalization.pl line 333. Error, cmd: /home/fuad/Downloads/Trinityrnaseq-v2.6.6.wExtSampleData/Trinityrnaseq-v2.6.6/util/insilico_read_normalization.pl --seqType fa --JM 4G --max_cov 50 --min_cov 1 --CPU 4 --output /home/fuad/Downloads/Trinityoutput/insilico_read_normalization --max_pct_stdev 10000 --SS_lib_type RF --left /home/fuad/Downloads/catination/left.fastq --right /home/fuad/Downloads/catination/right.fastq --pairs_together --PARALLEL_STATS died with ret 7424 at /home/fuad/Downloads/Trinityrnaseq-v2.6.6.wExtSampleData/Trinityrnaseq-v2.6.6/Trinity line 2581. main::process_cmd("/home/fuad/Downloads/Trinityrnaseq-v2.6.6.wExtSampleData/Trin"...) called at /home/fuad/Downloads/Trinityrnaseq-v2.6.6.wExtSampleData/Trinityrnaseq-v2.6.6/Trinity line 3127 main::normalize("/home/fuad/Downloads/Trinityoutput/insilico_read_normalization", 50, ARRAY(0x564b84843b70), ARRAY(0x564b84843ba0)) called at /home/fuad/Downloads/Trinityrnaseq-v2.6.6.wExtSampleData/Trinityrnaseq-v2.6.6/Trinity line 3074 main::run_normalization(50, ARRAY(0x564b84843b70), ARRAY(0x564b84843ba0)) called at /home/fuad/Downloads/Trinityrnaseq-v2.6.6.wExtSampleData/Trinityrnaseq-v2.6.6/Trinity line 1294
trinity

Hello fuad.fsu,

Please use the formatting bar (especially the code option) to present your post better. I've done it for you this time.
code_formatting

Thank you!

0 answers

No answers yet.

Log in to answer this question.