Hi there,

I have several genomes fasta files for screening based on HMM. I wrote this very simple script. It seems that works - the output files are right. However, I also got this message

"Incorrect number of command line arguments. Usage: hmmscan [-options] <hmmdb> <seqfile>

where most common options are: -h : show brief help on version and usage

To see more help on available options, do /Users/alexjones/miniconda3/bin/hmmscan -h"

Someone knows why I get this message? The script is wrong?

I appreciate any tips. Thanks.

for file in ./*.fasta;
do
  hmmscan --domtblout ${file}.out.dm Target_HMM.txt ${file} > ${file}.out;
done