PacBio Sequel data
I just got back pacbio sequel data and I received:
-fasta.gz
-fastq.gz
-2 subreads.bam
-2 subreads.bam.pbi
-2 subreads.bam.xml
Why did they give me .bam files and why are there 2? If I want to use CANU for de novo assembly do I use the .bam files?
• 1,353 views
•
link
updated
by
GenoMax
•
written
by
kristina.mahan
•
written
by
kristina.mahan
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Attempting to Use circlator running into issues with CANU
written by dlera.lozano •
-
Recommendation for de novo scaffolder
written by atia.amin2010 •
-
Pacbio de-novo assembly
written by Ap1438 •
-
Analyzing PacBio sequel data and SRA
written by Smandape
-
Assembly quality check
written by tothepoint
-
polishing canu using quiver
written by renhaol •
-
inputs to genomicconsensus arrow algorithm
written by peri.tobias •
-
PacBio assemblies only ending up somewhere between 80 and 250 contigs.
written by dylan.lawrence •
-
Pipeline for hybrid genome assembly of long and short reads AND how to deal with PacBio sequel data
written by freddiejung •
-
finding repeats in de-novo assembled contig from PacBio reads
written by aindap
There is two because I wanted sequencing on 2 PacBio Sequel SMRT cells. Do I use the .bam or the .fastq for genome assembly?