This is a test version of Biostars. For the public version, visit https://www.biostars.org.
CNV calling for haplotype reference genome

Hi! I would like to perform CNV calling for several strains of Saccharomyces cerevisiae based on data after NGS sequencing. Can anyone recommend a tool which can base on haploid reference genome and without knowledge of samples ploidy? Thanks

next-gen alignment sequencing genome
• 1,075 views • link
updated by jared.andrews07 jared.andrews07 • written by katjanjarosz • katjanjarosz

1 answer

CNVkit should work, though it does require a normal "reference" sample(s) to base things on.

• 0 views • link
written by jared.andrews07 jared.andrews07

Log in to answer this question.

More posts like this