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Linkage disequilibrium with one sample

I have vcf files for various cultivars. Can I calculate linkage disequilibrium from a vcf file of only one cultivar or should I group them somehow?

ld plink19
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updated by chrchang523 chrchang523 • written by felipead66 felipead66

1 answer

Linkage disequilibrium computations require population data. The latest PLINK 2.0 build errors out if you attempt them with less than 50 samples.

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written by chrchang523 chrchang523

I thought so. Thank you very much for your answer.

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written by felipead66 felipead66

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